Publications

Zoe Swank, Ella Borberg, Yulu Chen, Yasmeen Senussi, Sujata Chalise, Zachary Manickas-Hill, Xu Yu, Jonathan Li, Galit Alter, Timothy Henrich, Daniel Kelly, Rebecca Hoh, Sarah Goldberg, Steven Deeks, Jeffrey Martin, Michael Peluso, Aarthi Talla, Xiaojun Li, Peter Skene, Thomas Bumol, Troy Torgerson, Julie Czartoski, Juliana McElrath, Elizabeth Karlson, and David Walt. 2024. “Measurement of Circulating Viral Antigens Post-SARS-CoV-2 Infection in a Multicohort Study”. Clin Microbiol Infect, 30, 12, Pp. 1599-1605. doi:10.1016/j.cmi.2024.09.001

Amelia Tan, Rafael Gonçalves, William Yuan, Gabriel Brat, Robert Gentleman, and Isaac Kohane. 2024. “Implications of Mappings Between International Classification of Diseases Clinical Diagnosis Codes and Human Phenotype Ontology Terms”. JAMIA Open, 7, 4, Pp. ooae118. doi:10.1093/jamiaopen/ooae118

Linda Geng, Kristine Erlandson, Mady Hornig, Rebecca Letts, Caitlin Selvaggi, Hassan Ashktorab, Ornina Atieh, Logan Bartram, Hassan Brim, Shari Brosnahan, Jeanette Brown, Mario Castro, Alexander Charney, Peter Chen, Steven Deeks, Nathaniel Erdmann, Valerie Flaherman, Maher Ghamloush, Paul Goepfert, Jason Goldman, Jenny Han, Rachel Hess, Ellie Hirshberg, Susan Hoover, Stuart Katz, Daniel Kelly, Jonathan Klein, Jerry Krishnan, Joyce Lee-Iannotti, Emily Levitan, Vincent Marconi, Torri Metz, Matthew Modes, Janko Nikolich, Richard Novak, Igho Ofotokun, Megumi Okumura, Sairam Parthasarathy, Thomas Patterson, Michael Peluso, Athena Poppas, Orlando Quintero Cardona, Jake Scott, Judd Shellito, Zaki Sherif, Nora Singer, Barbara Taylor, Tanayott Thaweethai, Monica Verduzco-Gutierrez, Juan Wisnivesky, Grace McComsey, Leora Horwitz, and Andrea Foulkes. 2024. “2024 Update of the RECOVER-Adult Long COVID Research Index”. JAMA. doi:10.1001/jama.2024.24184

Valeria Bustos, Robin Wang, Jaime Pardo, Avinash Boppana, Griffin Weber, Max Itkin, and Dhruv Singhal. 2024. “Mapping the Anatomy of the Human Lymphatic System”. J Reconstr Microsurg, 40, 9, Pp. 672-79. doi:10.1055/s-0044-1782670

Nicholas Dobbins, Michele Morris, Eugene Sadhu, Douglas MacFadden, Marc-Danie Nazaire, William Simons, Griffin Weber, Shawn Murphy, and Shyam Visweswaran. 2024. “Towards Cross-Application Model-Agnostic Federated Cohort Discovery”. J Am Med Inform Assoc, 31, 10, Pp. 2202-9. doi:10.1093/jamia/ocae211

Kristine Erlandson, Linda Geng, Caitlin Selvaggi, Tanayott Thaweethai, Peter Chen, Nathan Erdmann, Jason Goldman, Timothy Henrich, Mady Hornig, Elizabeth Karlson, Stuart Katz, Kim, Sushma Cribbs, Adeyinka Laiyemo, Rebecca Letts, Janet Lin, Jai Marathe, Sairam Parthasarathy, Thomas Patterson, Brittany Taylor, Elizabeth Duffy, Monika Haack, Boris Julg, Gabrielle Maranga, Carla Hernandez, Nora Singer, Jenny Han, Priscilla Pemu, Hassan Brim, Hassan Ashktorab, Alexander Charney, Juan Wisnivesky, Jenny Lin, Helen Chu, Minjoung Go, Upinder Singh, Emily Levitan, Paul Goepfert, Janko Nikolich, Harvey Hsu, Michael Peluso, Daniel Kelly, Megumi Okumura, Valerie Flaherman, John Quigley, Jerry Krishnan, Mary Beth Scholand, Rachel Hess, Torri Metz, Maged Costantine, Dwight Rouse, Barbara Taylor, Mark Goldberg, Gailen Marshall, Jeremy Wood, David Warren, Leora Horwitz, Andrea Foulkes, and Grace McComsey. 2024. “Differentiation of Prior SARS-CoV-2 Infection and Postacute Sequelae by Standard Clinical Laboratory Measurements in the RECOVER Cohort”. Ann Intern Med, 177, 9, Pp. 1209-21. doi:10.7326/M24-0737

Rachel Gross, Tanayott Thaweethai, Lawrence Kleinman, Jessica Snowden, Erika Rosenzweig, Joshua Milner, Kelan Tantisira, Kyung Rhee, Terry Jernigan, Patricia Kinser, Amy Salisbury, David Warburton, Sindhu Mohandas, John Wood, Jane Newburger, Dongngan Truong, Valerie Flaherman, Torri Metz, Elizabeth Karlson, Lori Chibnik, Deepti Pant, Aparna Krishnamoorthy, Richard Gallagher, Michelle Lamendola-Essel, Denise Hasson, Stuart Katz, Shonna Yin, Benard Dreyer, Megan Carmilani, Coombs, Megan Fitzgerald, Nick Güthe, Mady Hornig, Rebecca Letts, Aimee Peddie, Brittany Taylor, Venkataraman Balaraman, Amanda Bogie, Hulya Bukulmez, Allen Dozor, Daniel Eckrich, Amy Elliott, Danielle Evans, Jonathan Farkas, Vincent Faustino, Laura Fischer, Sunanda Gaur, Ashraf Harahsheh, Uzma Hasan, Daniel Hsia, Gredia Huerta-Montañez, Kathy Hummel, Matt Kadish, David Kaelber, Sankaran Krishnan, Jessica Kosut, Jerry Larrabee, Peter Paul Lim, Ian Michelow, Carlos Oliveira, Hengameh Raissy, Zaira Rosario-Pabon, Judith Ross, Alice Sato, Michelle Stevenson, Maria Talavera-Barber, Ronald Teufel, Kathryn Weakley, Emily Zimmerman, Marie-Abele Bind, James Chan, Zoe Guan, Richard Morse, Harrison Reeder, Natascha Akshoomoff, Judy Aschner, Rakesh Bhattacharjee, Lesley Cottrell, Kelly Cowan, Viren D’Sa, Alexander Fiks, Maria Gennaro, Katherine Irby, Manaswitha Khare, Jeremy Landeo Guttierrez, Russell McCulloh, Shalu Narang, Manette Ness-Cochinwala, Sheila Nolan, Paul Palumbo, Julie Ryu, Juan Salazar, Rangaraj Selvarangan, Cheryl Stein, Alan Werzberger, William Zempsky, Robin Aupperle, Fiona Baker, Marie Banich, Deanna Barch, Arielle Baskin-Sommers, James Bjork, Susan Bookheimer, Sandra Brown, Casey, Linda Chang, Duncan Clark, Anders Dale, Mirella Dapretto, Thomas Ernst, Damien Fair, Sarah Feldstein Ewing, John Foxe, Edward Freedman, Naomi Friedman, Hugh Garavan, Dylan Gee, Raul Gonzalez, Kevin Gray, Mary Heitzeg, Megan Herting, Joanna Jacobus, Angela Laird, Christine Larson, Krista Lisdahl, Monica Luciana, Beatriz Luna, Pamela Madden, Erin McGlade, Eva Müller-Oehring, Bonnie Nagel, Michael Neale, Martin Paulus, Alexandra Potter, Perry Renshaw, Elizabeth Sowell, Lindsay Squeglia, Susan Tapert, Lucina Uddin, Sylia Wilson, Deborah Yurgelun-Todd, Andrea Foulkes, and Melissa Stockwell. 2024. “Characterizing Long COVID in Children and Adolescents”. JAMA, 332, 14, Pp. 1174-88. doi:10.1001/jama.2024.12747

Yashvardhan Jain, Claire Walsh, Ekin Yagis, Shahab Aslani, Sonal Nandanwar, Yang Zhou, Juhyung Ha, Katherine Gustilo, Joseph Brunet, Shahrokh Rahmani, Paul Tafforeau, Alexandre Bellier, Griffin Weber, Peter Lee, and Katy Börner. 2024. “Vasculature Segmentation in 3D Hierarchical Phase-Contrast Tomography Images of Human Kidneys”. BioRxiv. doi:10.1101/2024.08.25.609595

Katy Börner, Philip Blood, Jonathan Silverstein, Matthew Ruffalo, Rahul Satija, Sarah Teichmann, Gloria Pryhuber, Ravi Misra, Jeffrey Purkerson, Jean Fan, John Hickey, Gesmira Molla, Chuan Xu, Yun Zhang, Griffin Weber, Yashvardhan Jain, Danial Qaurooni, Yongxin Kong, Andreas Bueckle, and Bruce Herr. 2024. “Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage”. BioRxiv. doi:10.1101/2024.03.27.587041

Sanjay Jain, Liming Pei, Jeffrey Spraggins, Michael Angelo, James Carson, Nils Gehlenborg, Fiona Ginty, Joana Gonçalves, James Hagood, John Hickey, Neil Kelleher, Louise Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent Stockwell, Raf Van de Plas, Ioannis Vlachos, Mowei Zhou, Katy Börner, and Michael Snyder. 2024. “Author Correction: Advances and Prospects for the Human BioMolecular Atlas Program (HuBMAP)”. Nat Cell Biol, 26, 5, Pp. 839. doi:10.1038/s41556-024-01384-0

Isabella Faria, Adriana Montalvan, Stalin Canizares, Paulo Martins, Griffin Weber, Marwan Kazimi, and Devin Eckhoff. 2024. “The Power of Partnership: Exploring Collaboration Dynamics in U.S. Transplant Research”. Am J Surg, 227, Pp. 24-33. doi:10.1016/j.amjsurg.2023.10.008

Kiran Deol, Griffin Weber, and Yun William Yu. 2024. “SlowMoMan: A Web App for Discovery of Important Features Along User-Drawn Trajectories in 2D Embeddings”. Bioinform Adv, 4, 1, Pp. vbae095. doi:10.1093/bioadv/vbae095